rs29910516 SNP Detail

Summary

• ID
  rs29910516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:35532511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTTTGT TCATCCTCTT
  TTTGCCTCTA CCATCTTGAC ACCCTTAGCT GGAAGAGGCT CTAACCCTAA CAGACCCATG
  AGACTGTCCA AGAGATGGTA CAGAAGTGGC TGACTTCAGC ACCCTTGGCT GGCTTGGTTA
  GACATTCAGA AAGAGCAAAG TAAACGAACT GTGTTGTTCC CTTACTGAGT CTTACTGAGT
  Y
  GGTGAGTGGA AAGACAGGCA CTCGGACCCT TCATAAAACA CAGACAGCAC TACATCGTCT
  CAAGGTCAGG ACCACTGTTC TTGCTTCCAG TGTACATACA TAGGCCTTCT CTTTAGGGGA
  AACTGGCTAG ATTTCTGTAT TTATGAGTTA TGTGATAAAA CACCGTTGTC TAATCCGCTA
  TCTGACTAGA CGGGGTGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49582223	NES12862000	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29910516					SNP	C	C	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49582223	NES12862000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:35532511 () rs orientation: forward

Symbol	Name	Function Class
Gm65945	predicted gene, 65945	within coordinates
Rr75484	regulatory region 75484	929 bp proximal
Rr75485	regulatory region 75485	1445 bp proximal