rs29910772 SNP Detail

Summary

• ID
  rs29910772
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64302534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTTAAGCGA TAGAACCGGT AACTAAACTC CATCAAATAC AAAGCTATGC CTAAATTAAT
  TTAGGCACCA GAGTGTTGTT TTAGAGAAAA CTGCCTAAAT TAACAAATCA AAGCAGCCAA
  TAGTGTGACC TTATTTTTAG CCACATCTTT ATTTTGGGTA AATAAACTAT ACCTAGCAAG
  ATACCGAAGT CAAATTTGAC TTTATGGAGA GAAAGTAACT TGTGAACTGA AGTGAAATGT
  TTCAAGAAGA TACATTGAGT AATTTGTATC TTTGAAGTGG GACAAGTAAA AGTATCTTTA
  M
  AAAAAAAAAA AAAAAAAAAG AACAAAGCAG CCAGAGAAAT GGCTCCATGG TTAAGAGGAC
  TTGCTGCTCC TCCAGGAGAC TTGGGTTCCA AGCTCCCAGT GGTGGCAGTA TGTGACTTCA
  GTCCCAGGTG ATCTGCTTCC CTCTTGTAGC TTCCTCTGAC AATGCATGCA CATGATACAC
  ATTCAAGGAA GCCAAACACT CATACACATT TAACATTTTA AATTGGATTT CTTTTCTGGA
  GGCTGGCTGG GTACCACAGC TTGTATCTAC TGTATGGGGG GGTGGGGGGC GGGACGGGAA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39131850	mCV23508566	ABI	CRAMUS_MOUSE	f	SNP	C		A	A
ss149161880	ENSMUSSNP7135646	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29910772					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64302534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	1053 bp distal
Cpgi5774	CpG island 5774	482 bp distal
Gm47513	predicted gene, 47513	124 bp downstream
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	1275 bp downstream
Rr273318	regulatory region 273318	467 bp proximal
Rr281559	regulatory region 281559	133 bp distal
Rr403821	regulatory region 403821	1083 bp downstream
Tssr120196	transcription start site region 120196	1000 bp downstream
Tssr123018	transcription start site region 123018	1972 bp upstream
Tssr123019	transcription start site region 123019	1575 bp upstream
Tssr123020	transcription start site region 123020	1531 bp upstream
Tssr123021	transcription start site region 123021	1513 bp upstream
Tssr123022	transcription start site region 123022	1443 bp upstream
Zfp367	zinc finger protein 367	1521 bp upstream