rs29912662 SNP Detail

Summary

• ID
  rs29912662
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68944135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT TTTTTGTTTT TTGTTTTTTG
  K
  TTTTTGTTTT TTTTTAGTGT TAGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45375843	mCV23780222	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
ss146727000	ENSMUSSNP3377814	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29912662					SNP	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68944135 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	within coordinates
Rr44228	regulatory region 44228	735 bp distal
Rr44229	regulatory region 44229	66 bp proximal
Rr50098	regulatory region 50098	66 bp proximal
Tssr18100	transcription start site region 18100	1208 bp downstream
Tssr18101	transcription start site region 18101	220 bp downstream
Tssr18102	transcription start site region 18102	188 bp downstream
Tssr18103	transcription start site region 18103	13 bp upstream
Tssr18104	transcription start site region 18104	930 bp upstream