rs29913099 SNP Detail

Summary

• ID
  rs29913099
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93122346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATACAGCA CCCCGCATTT TTATAGCATT
  CGCCTCCGGC AAGATCGGTG AATAATTTAG AATAAGGAGT AAAACCAGCC TTCCATAGAA
  TTCTCAAAAC CACATCTGCT GCCCATTTCC TAACCCTCCC TGTACCTGCT GTGAGAGCCC
  B
  CCCCACCCCA CCCCCGCACA CCTTCAGCCT CAGTTTCCCA ACAGGAAGAA GATTCCCACT
  CGGTACAGCT TGCAGATGGT TATGTGCTGG CATTAGAGCA GCCTGAGTTA TCTGAGTTCT
  TTTTATGCTC TGGGCAGAGC TCAGAGCTCT                                 
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45376891	mCV23856433	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss320395296	CHEV_2_93132158	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29913099					SNP	C	C	G	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93122346 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr561147	regulatory region 561147			238 bp distal
Tspan18	tetraspanin 18			Intron
				Noncoding-Transcript-Variant