rs29913174 SNP Detail

Summary

• ID
  rs29913174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166901201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCCTGCA ATTCACTAAC
  TACACTGGCT TAAAACACAG AAATTTGTTT GCTTCTACCT TCCTGCTGCT GGGATTAAAG
  AAGCCACCTG ACTAGGGTCT TTTTTTTTTT TCTGGTGGAG ATAGGCTCTA ATCCTGTAAC
  CCAATGTGGC CTCTAATTCT TAAAATATTT ATTATTATAA ACACTATTAT CATTTTATGT
  R
  TATGAATGCT TTGACCCACA GGTGTCTATG CACGTTAATT CTCATAAAGT GTTAATATCT
  TAATATCATT AACTTAAGAA ACTAGAGCAT TACATTTTAC TGAGTTGCCA TTAAATTAGA
  AAAAAAAAAA TTTCAAGACT CAGTCGATGA GGGCACTTGC TAACCAACCC TGACAATGTC
  AGTTCAGTCC TCAAGACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45375142	mCV22943179	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29913174					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166901201 () rs orientation: forward

Symbol	Name	Function Class
Gm75600	predicted gene, 75600	1271 bp upstream
Rr570435	regulatory region 570435	565 bp distal
Rr570436	regulatory region 570436	141 bp proximal
Rr570437	regulatory region 570437	1145 bp proximal
Rr570438	regulatory region 570438	1282 bp proximal
Tssr21785	transcription start site region 21785	389 bp downstream
Tssr21786	transcription start site region 21786	1235 bp upstream
Tssr21787	transcription start site region 21787	1989 bp upstream
Tssr27731	transcription start site region 27731	773 bp downstream
Tssr27732	transcription start site region 27732	821 bp downstream
Tssr27733	transcription start site region 27733	857 bp downstream
Tssr27734	transcription start site region 27734	1136 bp downstream
Tssr27735	transcription start site region 27735	1166 bp downstream
Tssr27736	transcription start site region 27736	1550 bp downstream
Tssr27737	transcription start site region 27737	1557 bp downstream
Tssr27738	transcription start site region 27738	1568 bp downstream
Tssr27739	transcription start site region 27739	1788 bp downstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates