rs29914034 SNP Detail

Summary

• ID
  rs29914034
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89341449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAT TGAGTCCCGA GAAGCAGCAG
  M
  AGAAGAAAGC CTGTGACCAT AGAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45873737	mCV22633827	ABI	CRAMUS_MOUSE	f	SNP		A					A		C
ss48000097	NES11907825	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	C		C	C	C	C		C	C	C	A		C
ss133372212	ENSMUSSNP1524293	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							C
ss321852070	CHEV_6_89314461	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29914034					SNP	C	A	A	A	A	C	A	C	C	C	C	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48000097	NES11907825	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89341449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	1082 bp distal
Plxna1	plexin A1	1854 bp upstream
Rr146639	regulatory region 146639	848 bp distal
Rr152199	regulatory region 152199	within coordinates
Tssr57621	transcription start site region 57621	149 bp upstream
Tssr62008	transcription start site region 62008	1893 bp upstream
Tssr62009	transcription start site region 62009	1830 bp upstream
Tssr62010	transcription start site region 62010	874 bp upstream
Tssr62011	transcription start site region 62011	49 bp upstream
Tssr62012	transcription start site region 62012	28 bp downstream