rs29917458 SNP Detail

Summary

• ID
  rs29917458
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107850654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCACGATG AGTTCCAGGG CAGCCTGGAT TACATGAGAT
  TCCCTCCCTA AAACAAAAAC AAACAACAAC AGAACTTTGA AAAGCACAGC TGAGTATGTA
  S
  CTCTGTTGGT AGAGTGCTTT CCGTGCCCAG CATCACATAA TCTTGAGTGT GGCGATGCCA
  TCCCTTTTTA GGAAATAAAG GCAGAAGGGT CAGAAGTTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46354040	mCV25005316	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	C
ss136951187	ENSMUSSNP3205732	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29917458					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107850654 () rs orientation: forward

Symbol	Name	Function Class
Rr401669	regulatory region 401669	1946 bp upstream
Rr686670	regulatory region 686670	598 bp distal
Rr686671	regulatory region 686671	1054 bp distal
Rr686672	regulatory region 686672	1589 bp proximal
Traip	TRAF-interacting protein	1185 bp downstream
Tssr87038	transcription start site region 87038	1341 bp downstream