rs29918573 SNP Detail

Summary

• ID
  rs29918573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13334990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCTATG TTAGAGAGTG
  GGCAGAGGTG GAGACAGGGA AATAATCAGA CCCCTCCGAT ATATTAAAAC TGGCTTATCT
  ATATAGGATA CCCCCACCAA CTGCAGACCT CAGGAGAGTA CCAACATGTG CAGCAGTGTA
  TTACACACAG GAGGAGCCAG GAGCTGGCAC CACAGTCACA TGGTCTGATG TTAGCCTTTA
  Y
  AGATTAAACA TCGTATCCAG ATGCTGGCTG TGGTGGTGCA GGCCTTTACT CCCAGAATTT
  GGGAGACAGA GGAAACTAGA TCTCTGATTT GGGGATAGCC TGTCTACATA GTGAGTTCCA
  GGCCAGCCAA GGATACATAC TGAGACCCTC CACCCCACAC CCCTTATGGT CTTCCCCACT
  ACTCCCGCCA TAAAGAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394863	NES11493513	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	T	T		C
ss322505800	CHEV_8_13284990	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29918573					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394863	NES11493513	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13334990 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	362 bp downstream
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Gm25014	predicted gene, 25014	1776 bp upstream
Rr659902	regulatory region 659902	1573 bp distal
Rr659903	regulatory region 659903	1890 bp proximal