rs29918596 SNP Detail

Summary

• ID
  rs29918596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAAGATG GCGTTAGCAC
  ACCAACAAGA CCTGACATTA TTCAATGTTA GTGAAGGAAT GGGCTGACAG AATTCTTATA
  TACTACAAGT GAAAACACAG GGTGGAACAA CCACTTCAGA AAAGGTTCTG GAAGTTTCTT
  TTAAAGCTAA TACACACTGA GCCCTGTGAC CCAGCAATTT CATCCCAGGA GAAATGAAAC
  R
  TGTTCACAAA TTGATGATGT GCATAGAACA TTTATAGAAA GTATGCGCAC AATTCGAAAC
  TCCCCAGGGG CCATTTGAAA GAAGAATAAA TTAGCACATC TTGGCACATT CATACAGTGG
  AAGACTGCGT CCCTGTCAGG AGGATCAGCT GCAGGCCAGA TGGACCAAAA CAATATCAGA
  GAGCGTTACT GGGATGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45378488	mCV23867903	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148023843	ENSMUSSNP5976819	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320569678	CHEV_2_154014928	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29918596					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031112 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	1626 bp upstream
Rr567773	regulatory region 567773	1395 bp distal
Rr567774	regulatory region 567774	1136 bp proximal
Rr567775	regulatory region 567775	1637 bp proximal
Rr567776	regulatory region 567776	1863 bp proximal
Tssr20971	transcription start site region 20971	1557 bp upstream
Tssr20972	transcription start site region 20972	1571 bp upstream
Tssr20973	transcription start site region 20973	1584 bp upstream
Tssr20974	transcription start site region 20974	1614 bp upstream
Tssr20975	transcription start site region 20975	1641 bp upstream