rs29919346 SNP Detail

Summary

• ID
  rs29919346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13335175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTTAGC CTTTACAGAT
  TAAACATCGT ATCCAGATGC TGGCTGTGGT GGTGCAGGCC TTTACTCCCA GAATTTGGGA
  GACAGAGGAA ACTAGATCTC TGATTTGGGG ATAGCCTGTC TACATAGTGA GTTCCAGGCC
  AGCCAAGGAT ACATACTGAG ACCCTCCACC CCACACCCCT TATGGTCTTC CCCACTACTC
  Y
  CGCCATAAAG AAAGTGCCTG GCGAAGCAGC TCAGTGTGCT CACTGCATGA GCTGGACAGC
  TGAGTTCCAC CCTCAGAGCC TACACAAGAG GGAAAGGGGA GGGGAGGGGA GGGGAGGGGA
  GGGGAGGGGA GGGGGGAGAG GAGGGAAGAA CTGACTCCAC ATGTCCACCT CAGAATAAAA
  GAAATGATAA GATTTATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47394866	NES11493476	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29919346					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394866	NES11493476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13335175 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	177 bp downstream
Cpgi20111	CpG island 20111	1903 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Gm25014	predicted gene, 25014	1961 bp upstream
Rr659902	regulatory region 659902	1758 bp distal
Rr659903	regulatory region 659903	1705 bp proximal