rs29919626 SNP Detail

Summary

• ID
  rs29919626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86053766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG AGTGAAGAGC CAGGCCCTGC
  Y
  AGCCAGTCTG CTAGTTTCCC CCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45876197	mCV23939216	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss51756604	NES14801142	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	C		C	C	C	T		T	C	C	C		C
ss133354639	ENSMUSSNP4438233	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss321845680	CHEV_6_86026778	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29919626					SNP	C	C	C	T	T	C	C	T	C	C	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51756604	NES14801142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86053766 () rs orientation: forward

Symbol	Name	Function Class
Add2	adducin 2	Intron
Rr633328	regulatory region 633328	within coordinates
Rr633329	regulatory region 633329	783 bp proximal
Rr633330	regulatory region 633330	1311 bp proximal
Tssr57448	transcription start site region 57448	1253 bp upstream
Tssr57449	transcription start site region 57449	1286 bp upstream