rs29919906 SNP Detail

Summary

• ID
  rs29919906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30174421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GGGTGCCGCC GGCCGAGGTG
  Y
  GCCCCGATGC CCTACCATCC CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45875029	mCV24692119	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss133095165	ENSMUSSNP6249517	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321776218	CHEV_6_30124422	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29919906					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30174421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	within coordinates
Mirc35hg	microRNA cluster 35, host gene	297 bp upstream
Rncr4	retina expressed non-coding RNA 4	within coordinates
Rr146074	regulatory region 146074	within coordinates
Tssr55327	transcription start site region 55327	1552 bp downstream
Tssr55328	transcription start site region 55328	835 bp upstream
Tssr55329	transcription start site region 55329	855 bp upstream
Tssr55330	transcription start site region 55330	903 bp upstream
Tssr55331	transcription start site region 55331	935 bp upstream
Tssr55332	transcription start site region 55332	958 bp upstream
Tssr55333	transcription start site region 55333	1393 bp upstream
Tssr60107	transcription start site region 60107	343 bp upstream
Tssr60108	transcription start site region 60108	313 bp upstream
Tssr60109	transcription start site region 60109	286 bp upstream
Tssr60110	transcription start site region 60110	306 bp downstream
Tssr60111	transcription start site region 60111	1311 bp downstream