rs29920125 SNP Detail

Summary

• ID
  rs29920125
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13335854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCAAGTG ACTTTCATTA GAGCTTCCCT TGTCACGGAA
  GCCAAAGCAT TGGGGGCATT TTCTCTTCCA TTATTCTAGT GTTTAAAATG CATAGGACTT
  K
  AAAAAACGTA TGTAATTTGT GTGTATGTGT CCCAACGTGT GTGTGTGTGG AGATCAGAAA
  ACAACTGTAT TGTCGGTCCT CTTTACCCAC CATTTGGATT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47394875	NES11493388	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29920125					SNP	T	T	T	T	T	T	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394875	NES11493388	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13335854 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	within coordinates
Cpgi20111	CpG island 20111	1224 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Rr659903	regulatory region 659903	1026 bp proximal
Rr659904	regulatory region 659904	1546 bp proximal
Rr659905	regulatory region 659905	1969 bp proximal
Tssr80437	transcription start site region 80437	1960 bp downstream