rs29920131 SNP Detail

Summary

• ID
  rs29920131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13335928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAAATC CATGCTAAGG
  TCTGCTCAGG CAAGTGACTT TCATTAGAGC TTCCCTTGTC ACGGAAGCCA AAGCATTGGG
  GGCATTTTCT CTTCCATTAT TCTAGTGTTT AAAATGCATA GGACTTTAAA AAACGTATGT
  AATTTGTGTG TATGTGTCCC AACGTGTGTG TGTGTGGAGA TCAGAAAACA ACTGTATTGT
  Y
  GGTCCTCTTT ACCCACCATT TGGATTGTAC TTGACGGTAG CTACCTTTAC CTGTAAAGCC
  ATCCCACTGG CCCCAAAATG AAAAAATCCT CAACTAACAC TGGACAGTCC AGTTGACCTC
  AAGAATTGGT ATAGGCTTGC CTGGCCTGGA ACTTGCTATA TAGACCAGGA TGACCTTGAA
  TCTAGATTAC TGCCTGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394881	NES11493393	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	T	T		C
ss322505814	CHEV_8_13285928	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29920131					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394881	NES11493393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13335928 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	within coordinates
Cpgi20111	CpG island 20111	1150 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Rr659903	regulatory region 659903	952 bp proximal
Rr659904	regulatory region 659904	1472 bp proximal
Rr659905	regulatory region 659905	1895 bp proximal
Tssr76388	transcription start site region 76388	1959 bp upstream
Tssr80437	transcription start site region 80437	1886 bp downstream