rs29920562 SNP Detail

Summary

• ID
  rs29920562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173919837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTTCTTCC AATGGCCCTA GTTCTCGGTG TGGCCATGTA CACTAGGAGT AATTGCTTTG
  CTGCCCCCCC CCCGCCCTCC CCCCTCCGAG GACTCATGTT GGTGAGATTG CAAGGTGCTA
  GGCGCTTCAT TTTCCATTTC CCACACAGGA AATTAAGCTT CTCCATTCGA ACTTTTTTTT
  AAAAAAACAA AACAAAACAA AAAAAGGAAC CAACATGATG CGGATGTGAA AATTAATCCC
  CCAAAATAGC ACATGGCTTT TGATTTTATT GACCAGAACT TCACTTCGCC TAGCAGTGTA
  R
  GGTTTTGTTA TTGTTGTTGT TCTTTTTCAA AGCAATGTTC CAGTATGATT GCTGTATTTG
  GTTTGTTTTT GATGGAGGCT TTGGCTTCCA GAGCCTCAGT TTCCTGCTCT CTCAGATAGG
  GGGCGGGTCT GAATGGTGCA GCCAGATGAA TATTGTTAGC TTTGTAATAA TACCTTTAAT
  TGAAAAGGGA AGGTTTGAAT GGAAGCAGCC TTGAAACATG GGGGAATGCA CGGTCACCCC
  ACGACCTTAG GGGCTGCATT TGAAACATAG TTCGTGAAAC GCTGCAGCTT TCCCGCCTTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45377537	mCV24858246	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29920562					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173919837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12852	CpG island 12852	801 bp distal
D130084N16Rik	RIKEN cDNA D130084N16 gene	within coordinates
Rr397552	regulatory region 397552	366 bp downstream
Rr572063	regulatory region 572063	1777 bp distal
Rr572064	regulatory region 572064	1112 bp distal
Rr572065	regulatory region 572065	within coordinates
Rr572066	regulatory region 572066	109 bp proximal
Stx16	syntaxin 16	within coordinates
Tssr22077	transcription start site region 22077	1688 bp downstream
Tssr22078	transcription start site region 22078	985 bp downstream