rs29920578 SNP Detail

Summary

• ID
  rs29920578
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3812662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCGAGTAAAA ACGGAGCTGT CCAGTGTGGA GAGCAGTTTC TGCTATAGAA TTTAGCCACC
  AATAAATATT AGAGTTTAAT ATTTAAAAGA AGGCATTGAG GAGGACCTGA GTGCTGAAGG
  CTGACCTTTC TGAAGCAGAG TTTGGGTGAC TGCAAGGATG AGTTATTGCA TTAGCCTTTG
  GGTGTCCAGT GTCAGGTGTC CAGAAAGTCT TCTGGGAGAT GTGAGTTAGC TACAGAAGCG
  CAAAGCCAGG AAGGAAGGGC ACAGAACTGG GATAGAAGAA GGAAAAGGAA GTTGTTTTTT
  K
  TTTTTTTTTT TTTTTTTGGG ACTGTATCAA ATAACCCAGT TTCCTGACCT CAGCCCCAGT
  TTTCTTTCTG CAACAGGATA TGGAAGCAGA GCAAGGGTCT GATCACATTT CTCATTGACT
  TTGGGAGCCC ATTGATCGGG GGCCAGTAGA GACCAGCTGC AATGTCTGGT AATGCTGCTG
  AAATTGTTCT GAGGAGTAGC AACCAGGTGA GTAGATATGG CCTTCTGCAG ACCTCCCAGC
  TATGAAAAGA AGGTGTTTGC AAGACGAAGA TTAGCAAATA TCTTGCTTGC GTCTGCCATG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45378006	mCV24522133	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss146263111	ENSMUSSNP1669162	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29920578					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3812662 () rs orientation: forward

Symbol	Name	Function Class
Gm13180	predicted gene 13180	within coordinates
Gm36031	predicted gene, 36031	within coordinates
Rr550967	regulatory region 550967	884 bp distal
Tssr15925	transcription start site region 15925	1415 bp downstream