rs29920954 SNP Detail

Summary

• ID
  rs29920954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13336221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAACACTG GACAGTCCAG
  TTGACCTCAA GAATTGGTAT AGGCTTGCCT GGCCTGGAAC TTGCTATATA GACCAGGATG
  ACCTTGAATC TAGATTACTG CCTGACCCTG ACTTCCAAGT GCTGGGAGTA AAAGTATGTG
  TCAGGAATGG AACTCAGATC CTCTGGAAAA CAAGCAATTG GTGCTGAGCC AACAATTCAG
  R
  CTGGAGTGGC AGATTTTACT TTACGCTTTT GGTCAATTAA ATTGCAATAA AATATTACAC
  TTAGAAAAAA GACCATCAAG AAGAGACTAG CAGAACTCCT TCAGGGACAA CCTTTTAGGG
  GGACATTCTC TGCCTAACAG TTCCAATGAC TTATCTGCAT CAATTTCAGA TGTTTCAAAA
  CTAAATTTAC AGTAGACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394884	NES11493319	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		A	G	A	A		G
ss322505818	CHEV_8_13286221	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29920954					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394884	NES11493319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13336221 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	within coordinates
Cpgi20111	CpG island 20111	857 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Rr659903	regulatory region 659903	659 bp proximal
Rr659904	regulatory region 659904	1179 bp proximal
Rr659905	regulatory region 659905	1602 bp proximal
Tmco3	transmembrane and coiled-coil domains 3	1969 bp upstream
Tssr76388	transcription start site region 76388	1666 bp upstream
Tssr76389	transcription start site region 76389	1952 bp upstream
Tssr80437	transcription start site region 80437	1593 bp downstream