rs29920960 SNP Detail

Summary

• ID
  rs29920960
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13336498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAGAGA CTAGCAGAAC
  TCCTTCAGGG ACAACCTTTT AGGGGGACAT TCTCTGCCTA ACAGTTCCAA TGACTTATCT
  GCATCAATTT CAGATGTTTC AAAACTAAAT TTACAGTAGA CTGCTGCTAG AAGTGCCCGT
  AGCCACTGAT TTATGTTTTC ATAGTCTCCC ACAGAGCTCA ACACAGTTCC TCACATACAA
  M
  AGCAGCTGTT TAGAATTGTT TCAGCAGGTG ACAATCAGTA AAGAGATACA GGACAAGTGG
  ACCTTCCAAA CAACAGAAGC TGGTACGAAA AGTTTCATAC ACTTTATGTT ATCTTGTGAA
  GAATAACACA CAACCTAGGC ACAAGAGTGC TCCCATATAA GATTTTAGAA AGCATCTGTA
  AAATGTCCTT CCACAGACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47394890	NES11493321	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29920960					SNP	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394890	NES11493321	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13336498 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	within coordinates
Cpgi20111	CpG island 20111	580 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Rr659903	regulatory region 659903	382 bp proximal
Rr659904	regulatory region 659904	902 bp proximal
Rr659905	regulatory region 659905	1325 bp proximal
Rr659906	regulatory region 659906	1724 bp proximal
Tmco3	transmembrane and coiled-coil domains 3	1692 bp upstream
Tssr76388	transcription start site region 76388	1389 bp upstream
Tssr76389	transcription start site region 76389	1675 bp upstream
Tssr76390	transcription start site region 76390	1739 bp upstream
Tssr76391	transcription start site region 76391	1785 bp upstream
Tssr80437	transcription start site region 80437	1316 bp downstream