rs29921480 SNP Detail

Summary

• ID
  rs29921480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:139438235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCACACAC AAAATTAATG AATAAACGAG AGCTTTCTTC
  TACTATCTCA AATGTCTTTG TCCTCCTTTG GTGTGGAATA AATGGTACAA TTCATTCTTC
  Y
  ACAACTCCTT CCTTGGAATC ACCTTAGAAA AAGTTCACTG ACAAAACATC GCCCTCTCGT
  GGAAGGTTTT AATAGCACCT TCAAAAGAAC CACCATTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45877013	mCV24083669	ABI	CRAMUS_MOUSE	f	SNP		C			T		C
ss48128525	NES11845135	PERLEGEN	MM_PANEL2	f	SNP	T		C	T		C	C	T		C	C	T	C		T
ss133916385	ENSMUSSNP1768409	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss322019568	CHEV_6_139409758	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29921480					SNP	T	C	C	T	T	C	C	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48128525	NES11845135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:139438235 () rs orientation: forward

Symbol	Name	Function Class
Rr640348	regulatory region 640348	46 bp proximal