rs29924179 SNP Detail

Summary

• ID
  rs29924179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13376041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGGAGAT CTCTGAGGCC
  AGGGCGAGGG CAGCATACTG TCTCAGAAAA ACAAAACAAA ACCAAGCCCC AAACAAGAGT
  AGGACCTGAT ATAACCTATG AATTCTCGGT GAGAATTATA AATCGGTGTA GGCTGTTTCC
  CTGGGTAGGA TGGGTGGCCA TGGGGATAGA GTTTAGCAGT GTGCTTAGCA TGTTCAGAGT
  R
  CCAGATCCAA TCTCCAGTGC TGCTGTTGAG AAAGCAAACG ACCAGGGCAC TGTTATTGTT
  CTTGAGATAA AGGTCCTACT ATGTTGCTAA AGCTAGGCCT GAACTCGCAA ATCCTCCCGC
  CTCACATGAG TACCATGGAT CAAAGATGTC TAGGGCCACA CCTAGCTCAT AAAAAAAACC
  AGACGGCCAA GTTTTAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47395349	NES11524688	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G		G		G	A	A		G
ss148684156	ENSMUSSNP6056098	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G											A
ss322506187	CHEV_8_13326041	CHEVERUD	SCREENING_POP	f	SNP												G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29924179					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47395349	NES11524688	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13376041 () rs orientation: forward

Symbol	Name	Function Class
Rr175520	regulatory region 175520	560 bp proximal
Rr180371	regulatory region 180371	41 bp distal
Rr180372	regulatory region 180372	759 bp proximal