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rs29924179 SNP Detail
Summary
  • ID
    rs29924179
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr8:13376041 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGAGGGAGAT CTCTGAGGCC
    AGGGCGAGGG CAGCATACTG TCTCAGAAAA ACAAAACAAA ACCAAGCCCC AAACAAGAGT
    AGGACCTGAT ATAACCTATG AATTCTCGGT GAGAATTATA AATCGGTGTA GGCTGTTTCC
    CTGGGTAGGA TGGGTGGCCA TGGGGATAGA GTTTAGCAGT GTGCTTAGCA TGTTCAGAGT
    R
    CCAGATCCAA TCTCCAGTGC TGCTGTTGAG AAAGCAAACG ACCAGGGCAC TGTTATTGTT
    CTTGAGATAA AGGTCCTACT ATGTTGCTAA AGCTAGGCCT GAACTCGCAA ATCCTCCCGC
    CTCACATGAG TACCATGGAT CAAAGATGTC TAGGGCCACA CCTAGCTCAT AAAAAAAACC
    AGACGGCCAA GTTTTAGCAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss47395349 NES11524688 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G G G A A G
ss148684156 ENSMUSSNP6056098 ENSEMBL ENSEMBL_Sanger f SNP G G A
ss322506187 CHEV_8_13326041 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs29924179 SNP G G G G G G G G G G G G G A G A A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47395349 NES11524688 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:13376041 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr175520 regulatory region 175520 560 bp proximal
Rr180371 regulatory region 180371 41 bp distal
Rr180372 regulatory region 180372 759 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory