rs29924265 SNP Detail

Summary

• ID
  rs29924265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86348434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTG AGGTGTTTTA AAGTTTATCA
  Y
  GTTGCTATAT AAATTCCTGT TTCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46354496	mCV23664561	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss136756090	ENSMUSSNP4548352	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	T
ss323056343	CHEV_9_86359988	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29924265					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86348434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	1264 bp distal
Cpgi22102	CpG island 22102	536 bp proximal
Dop1a	DOP1 leucine zipper like protein A	760 bp upstream
Rr684095	regulatory region 684095	1442 bp distal
Rr684096	regulatory region 684096	941 bp distal
Rr684097	regulatory region 684097	1402 bp distal
Rr684098	regulatory region 684098	283 bp proximal
Rr684099	regulatory region 684099	700 bp proximal
Rr684100	regulatory region 684100	784 bp proximal
Tssr2956	transcription start site region 2956	1578 bp upstream
Tssr86391	transcription start site region 86391	782 bp upstream
Tssr86392	transcription start site region 86392	792 bp upstream
Tssr86393	transcription start site region 86393	843 bp upstream
Tssr90780	transcription start site region 90780	1438 bp upstream
Tssr90781	transcription start site region 90781	1423 bp upstream
Ube3d	ubiquitin protein ligase E3D	1431 bp upstream