rs29925441 SNP Detail

Summary

• ID
  rs29925441
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:131667495 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GAAAAAACCG AAAGAATAGT
  AATCTTTACT GTACCTATTT TTAGCTGAGT GCCACTTTTG TATGATTCTG AGTTAATAGT
  GCTATGATGC CAGAGAAACT CATCTTTGCC TCCCTCTTGC CCTGTTGGCT GTAAGTATGT
  CTACAGGGCT TGTGTGCCTA CCTTTTTGCA TCCTATATGC TACTCACCTA TGTGTGGTCC
  W
  TGAATACCAG AACATGCTTT GGTTCCTGCA GGTATATACC TACCCTGAAG GCTTCATCTA
  GAGTAAACAA AGTAGTCTGT ATAGTCTGCC ATTCCTCAGA TTCTCCTCAA CTTCCCACCC
  TCCAGTGACC TTTCTCCTTT TCTACAGTCA AACTATGGAC CTCACAACCT GACACTTCTT
  CAGATGCAAA ATATTCTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45876567	mCV22543597	ABI	CRAMUS_MOUSE	f	SNP		A	T					T		T
ss60948215	NES16180267	PERLEGEN	MM_PANEL2	r	SNP	T		A	A	A	A	A		A	A	A	A		A	A	A	A		A
ss133717555	ENSMUSSNP5242061	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	A							A
ss321962479	CHEV_6_131640550	CHEVERUD	SCREENING_POP	r	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29925441					SNP	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60948215	NES16180267	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:131667495 () rs orientation: reverse

Symbol	Name	Function Class
Tas2r114	taste receptor, type 2, member 114	469 bp upstream