rs29926980 SNP Detail

Summary

• ID
  rs29926980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97804096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTG TCACACGTGA AGGAAAGCAC
  Y
  AACCGTCCAA GTTTCCAGAG CTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45878255	mCV23115481	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss51375365	NES13725651	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	C		C	C	T	C	C	C	C	C	C
ss133421895	ENSMUSSNP486782	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29926980					SNP	C	T	C	T	T	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375365	NES13725651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97804096 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	1800 bp proximal
Tssr1945	transcription start site region 1945	178 bp upstream
Tssr57866	transcription start site region 57866	166 bp downstream
Tssr57867	transcription start site region 57867	99 bp upstream
Tssr57868	transcription start site region 57868	118 bp upstream
Tssr57869	transcription start site region 57869	144 bp upstream
Tssr57870	transcription start site region 57870	310 bp upstream
Tssr57871	transcription start site region 57871	330 bp upstream
Tssr57872	transcription start site region 57872	1104 bp upstream
Tssr57873	transcription start site region 57873	1155 bp upstream
Tssr57874	transcription start site region 57874	1165 bp upstream
Tssr57875	transcription start site region 57875	1182 bp upstream
Tssr57876	transcription start site region 57876	1217 bp upstream