rs29927407 SNP Detail

Summary

• ID
  rs29927407
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48589339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT CAGACTGGGG TATCCAAGCA
  K
  CTACACTGTC TGCCTGAAGC CGTAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45877381	mCV23167838	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	G
ss133165025	ENSMUSSNP2111105	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
ss321794020	CHEV_6_48562404	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29927407					SNP	T	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48589339 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	within coordinates
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	within coordinates
Gm67224	predicted gene, 67224	within coordinates
Rr135554	regulatory region 135554	1339 bp distal
Rr135555	regulatory region 135555	1262 bp proximal
Tssr60741	transcription start site region 60741	1333 bp downstream
Tssr60742	transcription start site region 60742	1344 bp downstream
Zfp775	zinc finger protein 775	within coordinates