rs29927678 SNP Detail

Summary

• ID
  rs29927678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40690536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT TCCATTAGTA GATAATCCAT
  Y
  CAGAGTGTAT ATTGGGGGTG GGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46354723	mCV23403823	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss136338026	ENSMUSSNP795901	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss322919533	CHEV_9_40587323	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29927678					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40690536 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Gm16096	predicted gene 16096	1287 bp downstream
Rr676918	regulatory region 676918	1900 bp distal
Rr676919	regulatory region 676919	955 bp distal
Tssr84467	transcription start site region 84467	1094 bp upstream
Tssr84468	transcription start site region 84468	1836 bp upstream
Tssr84469	transcription start site region 84469	1888 bp upstream