rs29928229 SNP Detail

Summary

• ID
  rs29928229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13440553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTCAAGG CCTGTCCTGT
  GCCTGAGACT CTGGATGCCC AGCCCAGCAA TAGTGACACT TGGTGTTTGG GGGACTCTGA
  GCCTGGGGGG CGGTGAGGGT CATGAGCAGG ATTGGTGCAG TAGATGCTGA CCTCTGGGGA
  GGGTTTCTAG CCTGCAGGTG GGTCTCTAGG GGAAAGGCAT CTGAACATGT CACATGTCAC
  R
  TTTTTCACTT GGGAAACACA TGTTGTGGCT TGCACCTTTA ATCCCAGCAC TTGGGAGGCA
  GAGGCAGGCA GATCTCTGTT TGGGGCCCAG CCTGATTTAC ATAGAGTTTC GGGATATCCA
  GGGCTACATA AAGATATTCT GTCTCAATGG GAAAAAAATA AAAGGGTTTT CATTGGGGAC
  TGGGGAAATG GCTTAACGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47396129	NES11521809	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29928229					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396129	NES11521809	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13440553 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Gm45410	predicted gene 45410	553 bp upstream
Rr659923	regulatory region 659923	295 bp proximal
Tssr80441	transcription start site region 80441	1738 bp upstream
Tssr80442	transcription start site region 80442	851 bp upstream
Tssr80443	transcription start site region 80443	687 bp upstream
Tssr80444	transcription start site region 80444	450 bp upstream