rs29928281 SNP Detail

Summary

• ID
  rs29928281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63283574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG GTGGATGGCA CCTGAGCACA
  Y
  CTGAGGCTGA TCTCTGATCT CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46354933	mCV25256640	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss136555591	ENSMUSSNP2133958	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29928281					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63283574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21914	CpG island 21914	975 bp proximal
Map2k5	mitogen-activated protein kinase kinase 5	within coordinates
Rr401444	regulatory region 401444	1452 bp upstream
Rr680973	regulatory region 680973	1600 bp proximal
Tssr90089	transcription start site region 90089	1332 bp downstream
Tssr90090	transcription start site region 90090	1522 bp downstream
Tssr90091	transcription start site region 90091	1543 bp downstream
Tssr90092	transcription start site region 90092	1668 bp downstream