rs29928394 SNP Detail

Summary

• ID
  rs29928394
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:57605139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCT AGGTGAGCAG GCAAAATTCA
  K
  AATACAGTCT CCTGGTGTCC CTAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39630040	mCV23017254	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss147182395	ENSMUSSNP4654380	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325633625	CHEV_18_57631721	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29928394					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:57605139 () rs orientation: forward

Symbol	Name	Function Class
Ctxn3	cortexin 3	within coordinates
Tssr151204	transcription start site region 151204	396 bp upstream