rs29928754 SNP Detail

Summary

• ID
  rs29928754
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45863425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGATCATAGA CAGGGCACTG TGGAGGAAGG AAGGAAGAGG CAGATGGATG GGGAACTGGG
  CCCTGTCCCC TCTGCTAATG TCCCAACTAC TTTCTGATGG AGGATAAAAT GACAGACAGC
  TTACCAGGAC ATCTTGGATG GAGATGACTG AGCAGGGGAA GGCCTTCTTG GAGGTCACCT
  TGACAATTAC CGAGTCCACA CCATCAGGAA ACTCGTATTT GAAGTACTGA GAACATAGGA
  AGGGAGAGTG TCATCTCAGG AGGGTGCTCT CTCTGCCCCT CCGAAGGGAT CTGTCTCCTC
  M
  AAGGGAGGTT TCAGAATCTT CTTGGCTCAG ACAATGAAGC TACGAGGGGA GAAGAGCCTT
  GACCGTGAAC ATCCCAGTCC TGCATGTCCC TGAGCACTGA TATCCTGTGT GTCAGCTGGG
  CACATAGGAT TGTGCCTGAG AGGCAGAGTA GGAAAGTCAG TGAGCAGACC CTGTCACTGC
  ACTGTCCCTG CCTGTCTATC CACACAGGAG CTCCGAGAGT CCCACCCTAG AGACAAAATT
  AATTGCTAGT CCTAGCAATT CTGTACCTAC TCCTGCTCTC ATATCCAAAT CTCCCCCAAT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46355796	mCV25173029	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29928754					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45863425 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	1974 bp upstream
Gm68914	predicted gene, 68914	875 bp downstream
Rr678012	regulatory region 678012	1484 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	732 bp downstream
Tssr89293	transcription start site region 89293	1546 bp downstream