rs29930597 SNP Detail

Summary

• ID
  rs29930597
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35964975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATCGCTGG CTCTCGCCCC CGCCCCCGCC GGAGCAGCCC
  CAGGGCCGCC GGCAAACAGA GTCCCTTTCA AGTTTTCCGC TGGGGCCGCC TGGCGGGGGC
  W
  GTGAGCGCGG TCGCCGCGGA CTTGTTTGGA GCGCGGTTTG AACGCCCAGC GCCACCTCAA
  TTGCCCCCAT CGGGGGGTTC GGGTGTACGG TCCTAGCAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39630576	mCV22565756	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss146946992	ENSMUSSNP6329661	ENSEMBL	ENSEMBL_Sanger	f	SNP				T
ss325584015	CHEV_18_35991576	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29930597					SNP	A	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35964975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	726 bp distal
Cpgi9845	CpG island 9845	427 bp distal
Cpgi9846	CpG island 9846	within coordinates
Cxxc5	CXXC finger 5	within coordinates
Gm29417	predicted gene 29417	829 bp upstream
Gm50371	predicted gene, 50371	within coordinates
Rr352723	regulatory region 352723	within coordinates
Rr370361	regulatory region 370361	228 bp upstream
Tssr150573	transcription start site region 150573	1811 bp downstream
Tssr150574	transcription start site region 150574	1714 bp downstream
Tssr150575	transcription start site region 150575	1559 bp downstream
Tssr150576	transcription start site region 150576	949 bp downstream
Tssr152918	transcription start site region 152918	1785 bp upstream