rs29931085 SNP Detail

Summary

• ID
  rs29931085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50405829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAAAACT GGAATTGGTA
  GAGGATCGTT GGTCACAAAA GTGGAGGCTG GGTGATTCAT CCAGGTAATG TCTTGAGCCA
  AATTCCAGAA GGCAATGTTT TCAGGAGGGA GGGAGGGAGG GTGATTTGCA TGCATGACCT
  CACCCAGAAG CTCCAGCCCC AGAGCATATA AACAGGAGCC TGTCACACCT AGTCTTACTA
  Y
  TGCCAGGCCC TGCAACCCAA ACAGCCCGGG ACCATGCTGT CGCTCCGCTC CTTGCTTCCA
  CACCTGGGAC TGTTCCTGTG CCTGGCTCTG CACTTATCCC CCTCCCTCTC TGCCAGTGAT
  AATGGGTCCT GCGTGGTCCT TGATAACATC TACACCTCCG ACATCTTGGA AATCAGCACT
  ATGGCTAACG TCTCTGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46356086	mCV24342296	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss47706250	NES11306369	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	C	T	C	C	C	C
ss136476418	ENSMUSSNP2884336	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29931085					SNP	T	T	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706250	NES11306369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50405829 () rs orientation: forward

Symbol	Name	Function Class
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678654	regulatory region 678654	within coordinates
Rr678655	regulatory region 678655	1308 bp proximal
Tssr2866	transcription start site region 2866	472 bp downstream
Tssr85023	transcription start site region 85023	383 bp downstream
Tssr85024	transcription start site region 85024	257 bp downstream
Tssr85025	transcription start site region 85025	within coordinates