rs29931130 SNP Detail

Summary

• ID
  rs29931130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57553801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                   CAGAGAAACC CTGTCTCGAA AAACAAAACA
  AAACATAAAA CAAACAAACA AAAAGAGTGT GCATCACCAC TACCCGGCCG GAGTCCACTT
  Y
  TTAAAACCTC TATATCTGCC AAATTCTCAT GAGGGGTTGT TGCAAAAATA TTGTCACAAA
  GAACAAATTG ATAAACAATG AAAAAAAAAA AAAAGGTACA AGGTCCACAA GAAACAGGAA
  AGAAGGGAAC ATGGGTTGAT TTTCTAGATC TGGGAACACA GCAGGGAGAC CTGACTTACT
  TCGTGTGTAG GGGAAAGCAG AAAGAGATGC GGTCAGTCCT GCAAGCTACA GGGCCAAAGA
  ACCACAGAGC TTCTTGGAAC TCTTCCGGGC TTTATTTTCA GCTGAGATGC AATAGGGAAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46356391	mCV25232968	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29931130					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57553801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21828	CpG island 21828	416 bp distal
Csk	c-src tyrosine kinase	within coordinates
Rr679716	regulatory region 679716	992 bp distal
Rr679717	regulatory region 679717	375 bp distal
Rr679718	regulatory region 679718	805 bp distal
Rr679719	regulatory region 679719	77 bp proximal
Rr679720	regulatory region 679720	903 bp proximal
Tssr85319	transcription start site region 85319	1239 bp downstream
Tssr85320	transcription start site region 85320	721 bp downstream
Tssr89802	transcription start site region 89802	1382 bp upstream
Tssr89803	transcription start site region 89803	1338 bp upstream
Tssr89804	transcription start site region 89804	1311 bp upstream
Tssr89805	transcription start site region 89805	1075 bp upstream
Tssr89806	transcription start site region 89806	977 bp upstream
Tssr89807	transcription start site region 89807	846 bp upstream
Tssr89808	transcription start site region 89808	192 bp downstream
Tssr89809	transcription start site region 89809	228 bp downstream