rs29932371 SNP Detail

Summary

• ID
  rs29932371
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13438435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTTAAA AAAAAAGTGA
  AGACCATGCC TGAAGCCCTA GGGACAGAGC TCTAGGGGAC AGATGTTCCC TGGACCACTT
  ATCAACTTCC CCTTTTGATG TATCACCTAG GGCTCAGCAT TGAAACATTT GGAAACATTT
  AGTGAAGGCT AAGTTTAGCA TTTGATAATG TACTTAGACA TTTGCAAGAG GTTTCTCTGA
  S
  ATCCATACCA CCTAAGTAGA CATGCCAAAC CCCATTAAAC AACTATGCTG TTGACGATCT
  GGAATATTTC TGTAAATACA AAATATAGAC AGTGCAGAAG GTAGGCCACC CACAGCAATG
  CCGGGCTTTC TGAAGCGTGA GTAGCTGCAC AGACCGGATG AGGGGAAAAC CATGGCTATA
  GCATTTTCCC TCTGTGTCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47396081	NES11521792	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29932371					SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396081	NES11521792	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13438435 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	Intron
Tssr76399	transcription start site region 76399	1783 bp downstream
Tssr80440	transcription start site region 80440	941 bp upstream
Tssr80441	transcription start site region 80441	363 bp downstream
Tssr80442	transcription start site region 80442	1258 bp downstream
Tssr80443	transcription start site region 80443	1424 bp downstream
Tssr80444	transcription start site region 80444	1664 bp downstream