rs29932506 SNP Detail

Summary

• ID
  rs29932506
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:42774940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACCCCAG CATAGCCAAT TACAAGCAAG CATCCTGATG
  TCACTGTACA CGGCACTGAG GAGAGATGGG CAGAATCATG CTCTCAGACA GCCAAAAAAA
  W
  CAGCAGGGCC TCCCAGGTGT CTGGTGGTGA GCAGAGGGGC ACGGCTGGAA ATGCCTGCCC
  CACTTAGGGC ATTCAGTCAT TTCCAAGCAA AAACAAAAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46355339	mCV23035093	ABI	CRAMUS_MOUSE	f	SNP		T					T		A
ss52008964	NES15031271	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T		T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29932506					SNP	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52008964	NES15031271	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42774940 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	1515 bp upstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	Intron
Rr677287	regulatory region 677287	within coordinates
Rr677288	regulatory region 677288	1400 bp proximal