rs29932938 SNP Detail

Summary

• ID
  rs29932938
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60178903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATACAGAG AAACCCTGTC
  TCGAGAAACA AACAAACAAA CAAAACCAAA AAACAAACCC AAACTAACAA ACAAAAAAGA
  ATGATTGCTG CCACGGGTAA CATCTGAGGA AGCCATCAGG AAGGATTCAG ATAATTATCT
  GCTTTAAAAA GGAATCTAAA CACAAACAAA TAACGCACAC AGAACACAGA CCTTCCCAGG
  S
  TTCTCAGCCC AGAGTTCTGT GTTTGCTTTG GTACCCAGCA CAGCCAGCAT AGCTTCATAA
  GGGCGCTCGT GAAGAAGATC TAGTTCTGTT GGAGGCTCAG TTACAAAGGC GAATGTCCAA
  GGCACCGGGG TGTGATGCTG CCATGGGATG GGGGTTGAGC ACCAGGAAGC CGATGCCCAT
  GAGTCATCTG TCCTACAGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss39133988	mCV22916470	ABI	CRAMUS_MOUSE	f	SNP		C	G				C		C
ss49114631	NES12407663	PERLEGEN	MM_PANEL2	f	SNP	C			C	G	C		G	C	C		G	C	G
ss149083721	ENSMUSSNP4472161	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						C
ss324360228	CHEV_13_60132450	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs29932938					SNP	C	C	G	C	G	C	C	G	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49114631	NES12407663	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60178903 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	704 bp distal
Tssr120109	transcription start site region 120109	1460 bp downstream
Tssr120110	transcription start site region 120110	1396 bp downstream
Tssr120111	transcription start site region 120111	1380 bp downstream