rs29933176 SNP Detail

Summary

• ID
  rs29933176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106769553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG TAGGATGGGC GGCGGGAGCA
  Y
  GGATCAGAAG CGGTTCCTTG TTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46355451	mCV22323068	ABI	CRAMUS_MOUSE	f	SNP		C				T		T
ss47774676	NES11262123	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T		T		T		T	C	T		T
ss136941108	ENSMUSSNP1431599	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss323187635	CHEV_9_106794685	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29933176					SNP	C	C	C	C	T	T	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774676	NES11262123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106769553 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	471 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	416 bp upstream
Rr368849	regulatory region 368849	153 bp downstream
Rr686409	regulatory region 686409	950 bp distal
Rr686410	regulatory region 686410	833 bp distal
Rr686411	regulatory region 686411	546 bp distal
Rr686412	regulatory region 686412	378 bp distal
Rr686413	regulatory region 686413	130 bp distal
Rr686414	regulatory region 686414	within coordinates
Rr686415	regulatory region 686415	1080 bp proximal
Tssr86943	transcription start site region 86943	231 bp downstream
Tssr86944	transcription start site region 86944	96 bp upstream
Tssr86945	transcription start site region 86945	122 bp upstream
Tssr91353	transcription start site region 91353	981 bp upstream
Tssr91354	transcription start site region 91354	963 bp upstream
Tssr91355	transcription start site region 91355	957 bp upstream
Tssr91356	transcription start site region 91356	916 bp upstream
Tssr91357	transcription start site region 91357	434 bp upstream
Tssr91358	transcription start site region 91358	407 bp upstream
Tssr91359	transcription start site region 91359	384 bp upstream