rs29933344 SNP Detail

Summary

• ID
  rs29933344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13438589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCATTTG ATAATGTACT
  TAGACATTTG CAAGAGGTTT CTCTGAGATC CATACCACCT AAGTAGACAT GCCAAACCCC
  ATTAAACAAC TATGCTGTTG ACGATCTGGA ATATTTCTGT AAATACAAAA TATAGACAGT
  GCAGAAGGTA GGCCACCCAC AGCAATGCCG GGCTTTCTGA AGCGTGAGTA GCTGCACAGA
  Y
  CGGATGAGGG GAAAACCATG GCTATAGCAT TTTCCCTCTG TGTCATCACT CCTGTCAGCA
  GCGGATGGGC AGATGAGGTT CGCAAGTTTC CAGGGTTAAC CTGGGTCCTA TCCCATCTCC
  TGCTCCACCC ATCCTGGCCC CGCTCCGCCC TGCCCCACCC CAGCTGTGCT CACCTGGAAG
  GTGCAGTCCA CTCGGGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47396084	NES11521793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29933344					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396084	NES11521793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13438589 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Tssr76399	transcription start site region 76399	1937 bp downstream
Tssr80440	transcription start site region 80440	1095 bp upstream
Tssr80441	transcription start site region 80441	209 bp downstream
Tssr80442	transcription start site region 80442	1104 bp downstream
Tssr80443	transcription start site region 80443	1270 bp downstream
Tssr80444	transcription start site region 80444	1510 bp downstream