rs29933347 SNP Detail

Summary

• ID
  rs29933347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13438678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGCTGTT GACGATCTGG
  AATATTTCTG TAAATACAAA ATATAGACAG TGCAGAAGGT AGGCCACCCA CAGCAATGCC
  GGGCTTTCTG AAGCGTGAGT AGCTGCACAG ACCGGATGAG GGGAAAACCA TGGCTATAGC
  ATTTTCCCTC TGTGTCATCA CTCCTGTCAG CAGCGGATGG GCAGATGAGG TTCGCAAGTT
  Y
  CCAGGGTTAA CCTGGGTCCT ATCCCATCTC CTGCTCCACC CATCCTGGCC CCGCTCCGCC
  CTGCCCCACC CCAGCTGTGC TCACCTGGAA GGTGCAGTCC ACTCGGGGAG CTGTGTTGTT
  GCTGGGGAGG AACTTGACAA TCTAGGAGAA AGGGTGCCAT GTGCCCTTGA GGTGCAGGCA
  GACATTCACA CACAATTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47396087	NES11521794	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T		C	T	C	C		C
ss322506484	CHEV_8_13388678	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29933347					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396087	NES11521794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13438678 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Tssr80440	transcription start site region 80440	1184 bp upstream
Tssr80441	transcription start site region 80441	120 bp downstream
Tssr80442	transcription start site region 80442	1015 bp downstream
Tssr80443	transcription start site region 80443	1181 bp downstream
Tssr80444	transcription start site region 80444	1421 bp downstream