rs29933350 SNP Detail

Summary

• ID
  rs29933350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13439001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGAGGAA CTTGACAATC
  TAGGAGAAAG GGTGCCATGT GCCCTTGAGG TGCAGGCAGA CATTCACACA CAATTCTGAG
  CCATTACCCA TGGTACCACA GTGTAGGAGG GCAGCTGGCA GTGGTAGAGC TGAGATAGAG
  GGTCCTAGTC ACTGGCACCA CACCCATGCC TGCTGTGGTG ATTAGCAGCC TTCCTTGCTG
  Y
  AGAACAGGTC TACCTACTGC TCTCAGTGGG GTCCCCACAT TCTCACATCC CTTCCTAGAC
  TTCTTGAGCC TCAGTCATTG TCTCCTGAGC TCTGTGCAGG ACCTGCCTTT GGCAGGAGTG
  GCAACTGGGG CATGGACCCG TGGAGCTCTG ATCACCACCT GCTTGCCAGG CATCTCTGGG
  GAGACCCCCC CCCCCAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47396090	NES11521795	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29933350					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396090	NES11521795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13439001 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	Intron
Rr659923	regulatory region 659923	1847 bp proximal
Tssr80440	transcription start site region 80440	1507 bp upstream
Tssr80441	transcription start site region 80441	186 bp upstream
Tssr80442	transcription start site region 80442	692 bp downstream
Tssr80443	transcription start site region 80443	858 bp downstream
Tssr80444	transcription start site region 80444	1098 bp downstream