rs29933353 SNP Detail

Summary

• ID
  rs29933353
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13439238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCTCAC ATCCCTTCCT
  AGACTTCTTG AGCCTCAGTC ATTGTCTCCT GAGCTCTGTG CAGGACCTGC CTTTGGCAGG
  AGTGGCAACT GGGGCATGGA CCCGTGGAGC TCTGATCACC ACCTGCTTGC CAGGCATCTC
  TGGGGAGACC CCCCCCCCCA GTCACAGGGC TTCATGGTGG GTTCAGTACA CGTGTGTGTG
  K
  CTTTCTAAGG CCCCATAAAG TGGAAGTAGG AAGTGAGGCC ACTTGGTCTC TTCAACAGTG
  ACCCTGAGCC CCTGTCGTCT GAGTGTCACT CAGTTTGACT GCATTTCTGC CTCTTGCTTA
  CTGTGTCGGT GTTCTTAGGG CATTGACGGG ACTTGCTGTC CCTTGGCTTC TGATACCACC
  AGAACCTCAG TGGTTCCTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47396093	NES11521796	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G	T		G
ss322506487	CHEV_8_13389238	CHEVERUD	SCREENING_POP	f	SNP										G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29933353					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396093	NES11521796	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13439238 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Gm45410	predicted gene 45410	1868 bp upstream
Rr659923	regulatory region 659923	1610 bp proximal
Tssr80440	transcription start site region 80440	1744 bp upstream
Tssr80441	transcription start site region 80441	423 bp upstream
Tssr80442	transcription start site region 80442	455 bp downstream
Tssr80443	transcription start site region 80443	621 bp downstream
Tssr80444	transcription start site region 80444	861 bp downstream