rs29934296 SNP Detail

Summary

• ID
  rs29934296
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13439366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGCATC TCTGGGGAGA
  CCCCCCCCCC CAGTCACAGG GCTTCATGGT GGGTTCAGTA CACGTGTGTG TGGCTTTCTA
  AGGCCCCATA AAGTGGAAGT AGGAAGTGAG GCCACTTGGT CTCTTCAACA GTGACCCTGA
  GCCCCTGTCG TCTGAGTGTC ACTCAGTTTG ACTGCATTTC TGCCTCTTGC TTACTGTGTC
  K
  GTGTTCTTAG GGCATTGACG GGACTTGCTG TCCCTTGGCT TCTGATACCA CCAGAACCTC
  AGTGGTTCCT ATAGGATTTA CCCTGACAGA TTCCTGTCTC TGATGCAGAA GGAGCCCATG
  TAGAATACCC CCTGCTTCTC CAGTCTGAAT CAACAACTCA AGACCCCTGC TGGCTAAGAT
  TTCTTAAGAG CAGAACATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46190123	mCV23778096	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		G
ss47396096	NES11521797	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		T		G	G		T	G	T	T		T
ss148684291	ENSMUSSNP3955429	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
ss322506488	CHEV_8_13389366	CHEVERUD	SCREENING_POP	f	SNP													G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29934296					SNP	T	T	G	G	G	G	G	G	T	G	G	G	G	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396096	NES11521797	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13439366 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Gm45410	predicted gene 45410	1740 bp upstream
Rr659923	regulatory region 659923	1482 bp proximal
Tssr80440	transcription start site region 80440	1872 bp upstream
Tssr80441	transcription start site region 80441	551 bp upstream
Tssr80442	transcription start site region 80442	327 bp downstream
Tssr80443	transcription start site region 80443	493 bp downstream
Tssr80444	transcription start site region 80444	733 bp downstream