rs29934299 SNP Detail

Summary

• ID
  rs29934299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13439464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGAAGTG AGGCCACTTG
  GTCTCTTCAA CAGTGACCCT GAGCCCCTGT CGTCTGAGTG TCACTCAGTT TGACTGCATT
  TCTGCCTCTT GCTTACTGTG TCGGTGTTCT TAGGGCATTG ACGGGACTTG CTGTCCCTTG
  GCTTCTGATA CCACCAGAAC CTCAGTGGTT CCTATAGGAT TTACCCTGAC AGATTCCTGT
  Y
  TCTGATGCAG AAGGAGCCCA TGTAGAATAC CCCCTGCTTC TCCAGTCTGA ATCAACAACT
  CAAGACCCCT GCTGGCTAAG ATTTCTTAAG AGCAGAACAT GATGAGTGTG TGTGGAGTCC
  GGGTGGGTAG ATGAAGGGCC CAGTCCCCCA TCGTTGAGTG TGGGGAGGGG CCATTTCCAG
  AGCAGGACCC TTGTAACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47396099	NES11521798	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C		T	C	T	T		T
ss322506489	CHEV_8_13389464	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29934299					SNP	C	C	C	C	C	T	C	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396099	NES11521798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13439464 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Gm45410	predicted gene 45410	1642 bp upstream
Rr659923	regulatory region 659923	1384 bp proximal
Tssr80440	transcription start site region 80440	1970 bp upstream
Tssr80441	transcription start site region 80441	649 bp upstream
Tssr80442	transcription start site region 80442	229 bp downstream
Tssr80443	transcription start site region 80443	395 bp downstream
Tssr80444	transcription start site region 80444	635 bp downstream