rs29934302 SNP Detail

Summary

• ID
  rs29934302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13439558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGTCGG TGTTCTTAGG
  GCATTGACGG GACTTGCTGT CCCTTGGCTT CTGATACCAC CAGAACCTCA GTGGTTCCTA
  TAGGATTTAC CCTGACAGAT TCCTGTCTCT GATGCAGAAG GAGCCCATGT AGAATACCCC
  CTGCTTCTCC AGTCTGAATC AACAACTCAA GACCCCTGCT GGCTAAGATT TCTTAAGAGC
  R
  GAACATGATG AGTGTGTGTG GAGTCCGGGT GGGTAGATGA AGGGCCCAGT CCCCCATCGT
  TGAGTGTGGG GAGGGGCCAT TTCCAGAGCA GGACCCTTGT AACTCACTCT GTTCATTTTA
  ATAATGAAGC AGGGCTTCCC CTCCTCGAAG CCGAAGCTGG GGTCCGCCAG GCCTGAGCAG
  TTTTGTAGCA TGTCTGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47396102	NES11521799	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A		G	A	G	G		G
ss322506490	CHEV_8_13389558	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29934302					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396102	NES11521799	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13439558 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Gm45410	predicted gene 45410	1548 bp upstream
Rr659923	regulatory region 659923	1290 bp proximal
Tssr80441	transcription start site region 80441	743 bp upstream
Tssr80442	transcription start site region 80442	135 bp downstream
Tssr80443	transcription start site region 80443	301 bp downstream
Tssr80444	transcription start site region 80444	541 bp downstream