rs29934477 SNP Detail

Summary

• ID
  rs29934477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71247194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTTGTA AGTTTTTATG TAATACAGAA TATTTTAAAA
  ATAAAATTAA TAAATATTTT TAAAGGGTAG AGGGAAGAGA GAAAGTCACT CACATAATAG
  Y
  CCATTATATG TTGTCTAATT ACAGCACAGA CCAAAACCTC AGGTTCTCTC TTGTCCCTGT
  GTTATTAATA AGCGTGGAAT CATTAATGGA CTGCTTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45878461	mCV22321309	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss321817318	CHEV_6_71220204	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29934477					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71247194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	1192 bp proximal
Krcc1	lysine-rich coiled-coil 1	1467 bp upstream
Mir8112	microRNA 8112	1461 bp upstream
Rr136432	regulatory region 136432	994 bp distal
Rr146429	regulatory region 146429	6 bp proximal
Rr379579	regulatory region 379579	310 bp downstream
Rr379580	regulatory region 379580	511 bp upstream
Tssr56988	transcription start site region 56988	664 bp upstream
Tssr56989	transcription start site region 56989	1365 bp upstream
Tssr56990	transcription start site region 56990	1462 bp upstream
Tssr61348	transcription start site region 61348	504 bp downstream
Tssr61349	transcription start site region 61349	521 bp downstream
Tssr61350	transcription start site region 61350	1271 bp downstream