rs29934906 SNP Detail

Summary

• ID
  rs29934906
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50799071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATACAGA GGAATTCAGC
  CAACAGACTC CTTAGGACAG GGCAAGCTCC CCACTCTGCC TGGCTGACCT CAGGCTCAGG
  GATCTGTGGT CACGTCTCTG TGCCTGGATT GTGGATAGGT GTGTCACTGA TGACAGCTCC
  ACGTTTGATG TGAAGTTCTA TCCACTCTGC TACATTCAAG ACCCATATTT ATTTCCTCTT
  W
  CTGGATTCTG CCCAAAAATA ATCTATGTAT CAAATTCATT GCTCGAGAGC TGTTTAGCCT
  TTGAAATTCT TGGCTGGAGC CAAAGTGGAA GAGCAGAGCC ATGCTTTACT GAGCCCAAGG
  TGGGACAACT GTGGTCTGTG AGATTTCCTA TGTGGCACAT AGCCCCAGAC ACAGCACAGT
  GCTTGCTCAG GCAAAACAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46355732	mCV25209778	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					T
ss47709490	NES11314253	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		A	T	T	T	A	T	T	T	T
ss136483610	ENSMUSSNP2141604	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29934906					SNP	A	A	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47709490	NES11314253	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50799071 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	181 bp upstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr195477	regulatory region 195477	730 bp proximal
Rr209487	regulatory region 209487	within coordinates