rs29935235 SNP Detail

Summary

• ID
  rs29935235
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45977079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGTTTA AATAAAAAGT
  TTGGTTTCAT TACATTAAAG TTGAAATTTA TTTAAATTTT AAGTACTTTG CTTGTTCTTG
  AGGTGCTGGG AAGTCAGTCA ACCAAGCTGT ATCACTAGGC CCTAAAACTC AATACTTTGA
  AATATATATA ATGAAATAAT ACAATTTCTA GGAAAAAGAT AGTGATAAAC ATGCTCATGG
  W
  TTTGACAACT TGCCATAAAC CCATACAGAC CCGAGAAGAA AGAGGCTCAA CTGAGGCGCT
  GCTTCCTTCC AGTAGATTGC TGGCTGGTAT GGGAGGGCCT TTCTCCTGGT CAGGTGGTCC
  TGGGCTGTGA GAGATAGACA GAGACAGACA GAGAGACAGA GATAGCTGGT GCTGGTAGAG
  TCCTTGCCTA GTATGGTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46356629	mCV25176536	ABI	CRAMUS_MOUSE	f	SNP		A	T				T
ss47695618	NES11315729	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	T	A	A	T	T	T	T
ss136422440	ENSMUSSNP543379	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29935235					SNP	A	A	T	T	T	T	T	T	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695618	NES11315729	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45977079 () rs orientation: forward

Symbol	Name	Function Class
Gm46110	predicted gene, 46110	within coordinates
Rr209232	regulatory region 209232	723 bp proximal
Sik3	SIK family kinase 3	within coordinates