rs29936224 SNP Detail

Summary

• ID
  rs29936224
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13440140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCATTCT CGTAGGAAGC
  AGACACGCTG CTACATTTGT GGTCACTCAC CTGCTAAGAA GCTGTGCAGG GTGTGTGTGA
  GGCCAGCCCA GGAACTGTTT TCAGAGACAT TGTAGGAAAT CTTCAGCCCT CTTTCCCCAT
  ACACGTCCGG TCTCAAGGTT ACCCCTGCAA GGAAAGCAAG CCTCCTTGAT CAGTTTCTCC
  K
  AACACTCACT TACACAAAGC CCTTGGCTCT GAGGTTGTTG AGACTCCCGT AAGCACCGAC
  CATAGGCAGC TGCCCCTGAC GCCCTCCTAG GTGGGGACCG CAGAGCAGAC TCCCTGTAGC
  TGAACAAGCT TGGCGATAAT GCTCTAAAGA AGGCCACAGC CTCTGAGGAC ACTGGCCTGG
  GGCCCCTGAC CTCTGCAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47396114	NES11521804	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	G	G		G
ss322506497	CHEV_8_13390140	CHEVERUD	SCREENING_POP	f	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29936224					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396114	NES11521804	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13440140 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Gm45410	predicted gene 45410	966 bp upstream
Rr659923	regulatory region 659923	708 bp proximal
Tssr80441	transcription start site region 80441	1325 bp upstream
Tssr80442	transcription start site region 80442	438 bp upstream
Tssr80443	transcription start site region 80443	274 bp upstream
Tssr80444	transcription start site region 80444	37 bp upstream