rs29936227 SNP Detail

Summary

• ID
  rs29936227
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13440166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTACAT TTGTGGTCAC
  TCACCTGCTA AGAAGCTGTG CAGGGTGTGT GTGAGGCCAG CCCAGGAACT GTTTTCAGAG
  ACATTGTAGG AAATCTTCAG CCCTCTTTCC CCATACACGT CCGGTCTCAA GGTTACCCCT
  GCAAGGAAAG CAAGCCTCCT TGATCAGTTT CTCCTAACAC TCACTTACAC AAAGCCCTTG
  S
  CTCTGAGGTT GTTGAGACTC CCGTAAGCAC CGACCATAGG CAGCTGCCCC TGACGCCCTC
  CTAGGTGGGG ACCGCAGAGC AGACTCCCTG TAGCTGAACA AGCTTGGCGA TAATGCTCTA
  AAGAAGGCCA CAGCCTCTGA GGACACTGGC CTGGGGCCCC TGACCTCTGC AGAATGCAGC
  ACAGTGGGCG TCAAGGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47396117	NES11521805	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	C	C		C
ss322506498	CHEV_8_13390166	CHEVERUD	SCREENING_POP	f	SNP							G				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29936227					SNP	G	G	G	G	G	G	G	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396117	NES11521805	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13440166 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	Intron
Gm45410	predicted gene 45410	940 bp upstream
Rr659923	regulatory region 659923	682 bp proximal
Tssr80441	transcription start site region 80441	1351 bp upstream
Tssr80442	transcription start site region 80442	464 bp upstream
Tssr80443	transcription start site region 80443	300 bp upstream
Tssr80444	transcription start site region 80444	63 bp upstream