rs29936233 SNP Detail

Summary

• ID
  rs29936233
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13440346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTACAC AAAGCCCTTG
  GCTCTGAGGT TGTTGAGACT CCCGTAAGCA CCGACCATAG GCAGCTGCCC CTGACGCCCT
  CCTAGGTGGG GACCGCAGAG CAGACTCCCT GTAGCTGAAC AAGCTTGGCG ATAATGCTCT
  AAAGAAGGCC ACAGCCTCTG AGGACACTGG CCTGGGGCCC CTGACCTCTG CAGAATGCAG
  S
  ACAGTGGGCG TCAAGGCCTG TCCTGTGCCT GAGACTCTGG ATGCCCAGCC CAGCAATAGT
  GACACTTGGT GTTTGGGGGA CTCTGAGCCT GGGGGGCGGT GAGGGTCATG AGCAGGATTG
  GTGCAGTAGA TGCTGACCTC TGGGGAGGGT TTCTAGCCTG CAGGTGGGTC TCTAGGGGAA
  AGGCATCTGA ACATGTCACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47396123	NES11521807	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		C	C		G
ss322506501	CHEV_8_13390346	CHEVERUD	SCREENING_POP	f	SNP									C			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs29936233					SNP	C	C	C	C	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47396123	NES11521807	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13440346 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Gm45410	predicted gene 45410	760 bp upstream
Rr659923	regulatory region 659923	502 bp proximal
Tssr80441	transcription start site region 80441	1531 bp upstream
Tssr80442	transcription start site region 80442	644 bp upstream
Tssr80443	transcription start site region 80443	480 bp upstream
Tssr80444	transcription start site region 80444	243 bp upstream