rs29936813 SNP Detail

Summary

• ID
  rs29936813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108142711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTCCCGGC AACCACATGG TGGCTCACAA CCATCTGTAA
  TGGGATCTGA TGCCCTCTTC CGGTGTGTCT GAGGACAGCT ACAGTATACT CATTTGAAAT
  R
  AATAAAACTT TAAAAAACTA TATTAAAAAA GCTGGGTGGT GGTAGCTTAC TCCTCTGATT
  CCAGAACTCG GGAGGCAGAG GCAAGTGGAT CTCTGATTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46357006	mCV25007152	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss136952148	ENSMUSSNP717519	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29936813					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108142711 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22331	CpG island 22331	1072 bp distal
Dag1	dystroglycan 1	1535 bp upstream
Gm69433	predicted gene, 69433	472 bp downstream
Rr401678	regulatory region 401678	1302 bp downstream
Rr686759	regulatory region 686759	1787 bp distal
Rr686761	regulatory region 686761	1454 bp distal
Rr686762	regulatory region 686762	328 bp distal
Rr686763	regulatory region 686763	846 bp proximal
Tssr87070	transcription start site region 87070	1426 bp downstream
Tssr91511	transcription start site region 91511	1693 bp upstream
Tssr91512	transcription start site region 91512	1547 bp upstream